Figure 12 ,Table 5
    • Figure 1.  The workflow of PTMiner. The part in the red box shows the process of the localization algorithm, in which the red arrows represent iterative updating of prior probabilities

    • Figure 2.  Setting the search parameters (open search)

    • Figure 3.  Setting the PTMiner parameters (open search)

    • Figure 4.  An example of filtered_result.txt displayed by Excel. Since one line of the original result file is too wide to display, it is cut into two lines to show here

    • Figure 5.  An example loc_result.txt displayed by Excel. Since one line of the original result file is too wide to display, it is cut into two lines to show here

    • Figure 6.  An example anno_result.txt displayed by Excel. Since one line of the original result file is too wide to display, the middle part of the lines are omitted here

    • Figure 7.  An example filtered_summary.txt displayed by Excel

    • Figure 8.  Setting the search parameters (closed search)

    • Figure 9.  Setting the PTMiner parameters (closed search)

    • Figure 10.  Selecting the target modifications

    • Figure 11.  Selecting the site specificities for each modification

    • Figure 12.  An example loc_result.txt displayed by Excel. Since one line of the original result file is too wide to display, the middle part of the lines are omitted here